| Gene Name | LTB |
| HF Protein Name | Lymphotoxin-beta |
| HF Function | Involved in virus replication |
| Uniprot ID | Q06643 |
| Protein Sequence | View Fasta Sequence |
| NCBI Gene ID | 4050 |
| Host Factor (HF) Name in Paper | LTB |
| Gene synonyms | TNFC TNFSF3 |
| Ensemble Gene ID | ENSG00000227507 |
| Ensemble Transcript | ENST00000376117 [Q06643-1];ENST00000383493 [Q06643-1];ENST00000420402 [Q06643-1];ENST00000421268 [Q06643-1];ENST00000429299 [Q06643-1];ENST00000444479 [Q06643-1];ENST00000446745 [Q06643-2];ENST00000456113 [Q06643-1];ENST00000457552 [Q06643-1] |
| KEGG ID | Go to KEGG Database |
| Gene Ontology ID(s) | GO:0005102, GO:0005125, GO:0005164, GO:0005615, GO:0005886, GO:0006955, GO:0007165, GO:0007267, GO:0010467, GO:0016021, GO:0033209, GO:0043588, GO:0045084, GO:0048535, |
| MINT ID | N.A. |
| STRING | Click to see interaction map |
| GWAS Analysis | Click to see gwas analysis |
| OMIM ID | 600978 |
| PANTHER ID | PTHR11471:SF29 |
| PDB ID(s) | 4MXW, |
| pfam ID | PF00229, |
| Drug Bank ID | N.A., |
| ChEMBL ID | CHEMBL3833421 |
| Organism | Homo sapiens (Human) |
| Virus Name | Hepatitis C virus |
| Virus Short Name | HCV |
| Order | Unassigned |
| Virus Family | Flaviviridae |
| Virus Subfamily | N.A. |
| Genus | Hepacivirus |
| Species | Hepatitis C virus |
| Host | Human |
| Cell Tropism | Hepatocytes |
| Associated Disease | Hepatitis, hepatocellular carcinoma |
| Mode of Transmission | Sexual contact, blood |
| VIPR DB link | http://www.viprbrc.org/brc/home.spg?decorator=flavi |
| ICTV DB link | https://talk.ictvonline.org/ictv-reports/ictv_online_report/positive-sense-rna-viruses/w/flaviviridae |
| Virus Host DB link | http://www.genome.jp/virushostdb/view/?virus_lineage=Flaviviridae |
| Paper Title | Identification of Host Genes Involved in Hepatitis C Virus Replication by Small Interfering RNA Technology |
| Author's Name | Ng TI, Mo H, Pilot-Matias T, He Y, Koev G, Krishnan P, Mondal R, Pithawalla R, He W, Dekhtyar T, Packer J, Schurdak M, Molla A. |
| Journal Name | Hepatology |
| Pubmed ID | 17518369 |
| Abstract | Hepatitis C virus (HCV) replication is highly dependent on host cell factors. Identification of these host factors not only facilitates understanding of the biology of HCV infection but also enables the discovery of novel targets for anti-HCV therapy. To identify hostgenes important for HCV RNA replication, we screened a library of small interfering RNA (siRNA) that targets approximately 4,000 human genes in Huh7-derived EN5-3 cells harboring an HCV subgenomic replicon with the nonstructural region NS3-NS5B from the 1b-N strain. Nine cellular genes that potentially regulate HCV replication were identified in this screen. Silencing of these genes resulted in inhibition of HCV replication by more than 60% and exhibited minimal toxicity. Knockdown of host gene expression by these siRNAs was confirmed at the RNA level and, in some instances, at the protein level. The level of siRNA silencing of these host genes correlated well with inhibition of HCV. These genes included those that encoded a G-protein coupled receptor (TBXA2R), a membrane protein (LTbeta), an adapter protein (TRAF2), 2 transcription factors (RelA and NFkappaB2), 2 protein kinases (MKK7 and SNARK), and 2 closely related transporter proteins (SLC12A4 and SLC12A5). Of interest, some of these genes are members of the tumor necrosis factor/lymphotoxin signaling pathway. |
| Used Model | EN5?3 cells |
| DOI | 10.1002/hep.21608 |
