Virus Details


VHFID3894

Host Factor Information

Gene Name VAMP8
HF Protein Name Vesicle-associated membrane protein 8
HF Function Antiviral protein associated with vesical trafficking
Uniprot ID Q9BV40
Protein Sequence View Fasta Sequence
NCBI Gene ID 8673
Host Factor (HF) Name in Paper VAMP8
Gene synonyms N.A.
Ensemble Gene ID ENSG00000118640
Ensemble Transcript ENST00000263864
KEGG ID Go to KEGG Database
Gene Ontology ID(s) GO:0000149, GO:0002479, GO:0005484, GO:0005737, GO:0005765, GO:0005769, GO:0005829, GO:0005886, GO:0006892, GO:0006906, GO:0008021, GO:0015031, GO:0016020, GO:0016021, GO:0016240, GO:0019869, GO:0030665, GO:0030667, GO:0030670, GO:0031201, GO:0031901, GO:0031902, GO:0031982, GO:0035577, GO:0035579, GO:0043312, GO:0046718, GO:0048471, GO:0055037, GO:0055038, GO:0061024, GO:0070062, GO:0070254, GO:0070821, GO:0097352, GO:0098594, GO:1903076, GO:1903531, GO:1903595,
MINT ID Q9BV40
STRING Click to see interaction map
GWAS Analysis Click to see gwas analysis
OMIM ID 603177
PANTHER ID N.A.
PDB ID(s) 4WY4,
pfam ID PF00957,
Drug Bank ID N.A.,
ChEMBL ID N.A.
Organism Homo sapiens (Human)

Pathogen Information

Virus Name Human herpesvirus 1
Virus Short Name HSV1
Order Herpesvirales
Virus Family Herpesviridae
Virus Subfamily Alphaherpesvirinae
Genus Simplexvirus
Species Herpes simplex virus 1
Host Human, mammals
Cell Tropism Primary site of infection: epithelial mucosal cells , latency: remains latent in sensory neurons (ganglions)
Associated Disease Skin vesicles or mucosal ulcers, rarely encephalitis and meningitis
Mode of Transmission Contact, saliva
VIPR DB link http://www.viprbrc.org/brc/vipr_allSpecies_search.do?method=SubmitForm&decorator=herpes
ICTV DB link https://talk.ictvonline.org/ictv-reports/ictv_9th_report/dsdna-viruses-2011/w/dsdna_viruses/91/herpesviridae
Virus Host DB link http://www.genome.jp/virushostdb/view/?virus_lineage=Herpesviridae

Publication Information

Paper Title A systematic analysis of host factors reveals a Med23-Interferon-lambda regulatory axis against herpes simplex virus Type 1 replication
Author's Name Samantha J. Griffiths, Manfred Koegl, Chris Boutell, Helen L. Zenner, Colin M. Crump, Francesca Pica, Orland Gonzalez, Caroline C. Friedel, Gerald Barry, Kim Martin, Marie H. Craigon, Rui Chen, Lakshmi N. Kaza, Even Fossum, John K. Fazakerley, Stacey Efstathiou, Antonio Volpi, Ralf Zimmer, Peter Ghazal, Ju rgen Haas
Journal Name PLOS Pathogens
Pubmed ID 23950709
Abstract Herpes simplex virus type 1 (HSV-1) is a neurotropic virus causing vesicular oral or genital skin lesions, meningitis and other diseases particularly harmful in immunocompromised individuals. To comprehensively investigate the complex interaction between HSV-1 and its host we combined two genome-scale screens for host factors (HFs) involved in virus replication. A yeast two-hybrid screen for protein interactions and a RNA interference (RNAi) screen with a druggable genome small interfering RNA (siRNA) library confirmed existing and identified novel HFs which functionally influence HSV-1 infection. Bioinformatic analyses found the 358 HFs were enriched for several pathways and multi-protein complexes. Of particular interest was the identification of Med23 as a strongly anti-viral component of the largely pro-viral Mediator complex, which links specific transcription factors to RNA polymerase II. The anti-viral effect of Med23 on HSV-1 replication was confirmed in gain-of-function gene overexpression experiments, and this inhibitory effect was specific to HSV-1, as a range of other viruses including Vaccinia virus and Semliki Forest virus were unaffected by Med23 depletion. We found Med23 significantly upregulated expression of the type III interferon family (IFN-lambda) at the mRNA and protein level by directly interacting with the transcription factor IRF7. The synergistic effect of Med23 and IRF7 on IFN-lambda induction suggests this is the major transcription factor for IFN-lambda expression. Genotypic analysis of patients suffering recurrent orofacial HSV-1 outbreaks, previously shown to be deficient in IFN-lambda secretion, found a significant correlation with a single nucleotide polymorphism in the IFN-lambda3 (IL28b) promoter strongly linked to Hepatitis C disease and treatment outcome. This paper describes a link between Med23 and IFN-lambda, provides evidence for the crucial role of IFN-lambda in HSV-1 immune control, and highlights the power of integrative genome-scale approaches to identify HFs critical for disease progression and outcome.
Used Model HeLa cell
DOI 10.1371/journal.ppat.1003514