Virus Details


VHFID3932

Host Factor Information

Gene Name IFI16
HF Protein Name Gamma-interferon-inducible protein 16
HF Function Antiviral protein
Uniprot ID Q16666
Protein Sequence View Fasta Sequence
NCBI Gene ID 3428
Host Factor (HF) Name in Paper IFI16
Gene synonyms IFNGIP1
Ensemble Gene ID ENSG00000163565
Ensemble Transcript ENST00000295809 [Q16666-1];ENST00000359709 [Q16666-6];ENST00000368131 [Q16666-2];ENST00000368132 [Q16666-2];ENST00000448393 [Q16666-3]
KEGG ID Go to KEGG Database
Gene Ontology ID(s) GO:0000122, GO:0000978, GO:0001047, GO:0001078, GO:0001819, GO:0002218, GO:0003690, GO:0003723, GO:0005634, GO:0005654, GO:0005730, GO:0005829, GO:0006351, GO:0006914, GO:0006954, GO:0008134, GO:0008283, GO:0010506, GO:0016020, GO:0016607, GO:0030097, GO:0030099, GO:0030224, GO:0032481, GO:0032731, GO:0040029, GO:0042149, GO:0042771, GO:0042802, GO:0043392, GO:0045071, GO:0045087, GO:0045824, GO:0045892, GO:0045944, GO:0051607, GO:0071479, GO:0072332, GO:0097202, GO:2000117,
MINT ID Q16666
STRING Click to see interaction map
GWAS Analysis Click to see gwas analysis
OMIM ID 147586
PANTHER ID N.A.
PDB ID(s) 2OQ0, 3B6Y, 3RLN, 3RLO, 3RNU, 4QGU,
pfam ID PF02760, PF02758,
Drug Bank ID N.A.,
ChEMBL ID N.A.
Organism Homo sapiens (Human)

Pathogen Information

Virus Name Human herpesvirus 1
Virus Short Name HSV1
Order Herpesvirales
Virus Family Herpesviridae
Virus Subfamily Alphaherpesvirinae
Genus Simplexvirus
Species Herpes simplex virus 1
Host Human, mammals
Cell Tropism Primary site of infection: epithelial mucosal cells , latency: remains latent in sensory neurons (ganglions)
Associated Disease Skin vesicles or mucosal ulcers, rarely encephalitis and meningitis
Mode of Transmission Contact, saliva
VIPR DB link http://www.viprbrc.org/brc/vipr_allSpecies_search.do?method=SubmitForm&decorator=herpes
ICTV DB link https://talk.ictvonline.org/ictv-reports/ictv_9th_report/dsdna-viruses-2011/w/dsdna_viruses/91/herpesviridae
Virus Host DB link http://www.genome.jp/virushostdb/view/?virus_lineage=Herpesviridae

Publication Information

Paper Title Interactions of the Antiviral Factor Interferon Gamma-Inducible Protein 16 (IFI16) Mediate Immune Signaling and Herpes Simplex Virus-1 Immunosuppression
Author's Name Benjamin A. Diner, Krystal K. Lum, Aaron Javitt, and Ileana M. Cristea
Journal Name Molecular and Cellular Proteomics
Pubmed ID 25693804
Abstract The interferon-inducible protein IFI16 has emerged as a critical antiviral factor and sensor of viral DNA. IFI16 binds nuclear viral DNA, triggering expression of antiviral cytokines during infection with herpesviruses. The knowledge of the mechanisms and protein interactions through which IFI16 exerts its antiviral functions remains limited. Here, we provide the first characterization of endogenous IFI16 interactions following infection with the prominent human pathogen herpes simplex virus 1 (HSV-1). By integrating proteomics and virology approaches, we identified and validated IFI16 interactions with both viral and host proteins that are involved in HSV-1 immunosuppressive mechanisms and host antiviral responses. We discover that during early HSV-1 infection, IFI16 is recruited to sub-nuclear puncta and subsequently targeted for degradation. We observed that the HSV-1 E3 ubiquitin ligase ICP0 is necessary, but not sufficient, for the proteasom e-mediated degradation of IFI16 following infection. We substantiate that this ICP0-mediated mechanism suppresses IFI16-dependent immune responses. Utilizing an HSV-1 strain that lacks ICP0 ubiquitin ligase activity provided a system for studying IFI16-dependent cytokine responses to HSV-1, as IFI16 levels were maintained throughout infection. We next defined temporal IFI16 interactions during this immune signaling response. We discovered and validated interactions with the viral protein ICP8 and cellular ND10 nuclear body components, sites at which HSV-1 DNA is present during infection. These interactions may be critical for IFI16 to bind to nuclear viral DNA. Altogether, our results provide critical insights into both viral inhibition of IFI16 and interactions that can contribute to IFI16 antiviral functions.
Used Model HFF, HEK293, Vero
DOI 10.1074/mcp.M114.047068