Virus Details


VHFID3972

Host Factor Information

Gene Name IFI16
HF Protein Name Gamma-interferon-inducible protein 16
HF Function Essential for virus latency
Uniprot ID Q16666
Protein Sequence View Fasta Sequence
NCBI Gene ID 3428
Host Factor (HF) Name in Paper IFI16
Gene synonyms IFNGIP1
Ensemble Gene ID ENSG00000163565
Ensemble Transcript ENST00000295809 [Q16666-1];ENST00000359709 [Q16666-6];ENST00000368131 [Q16666-2];ENST00000368132 [Q16666-2];ENST00000448393 [Q16666-3]
KEGG ID Go to KEGG Database
Gene Ontology ID(s) GO:0000122, GO:0000978, GO:0001047, GO:0001078, GO:0001819, GO:0002218, GO:0003690, GO:0003723, GO:0005634, GO:0005654, GO:0005730, GO:0005829, GO:0006351, GO:0006914, GO:0006954, GO:0008134, GO:0008283, GO:0010506, GO:0016020, GO:0016607, GO:0030097, GO:0030099, GO:0030224, GO:0032481, GO:0032731, GO:0040029, GO:0042149, GO:0042771, GO:0042802, GO:0043392, GO:0045071, GO:0045087, GO:0045824, GO:0045892, GO:0045944, GO:0051607, GO:0071479, GO:0072332, GO:0097202, GO:2000117,
MINT ID Q16666
STRING Click to see interaction map
GWAS Analysis Click to see gwas analysis
OMIM ID 147586
PANTHER ID N.A.
PDB ID(s) 2OQ0, 3B6Y, 3RLN, 3RLO, 3RNU, 4QGU,
pfam ID PF02760, PF02758,
Drug Bank ID N.A.,
ChEMBL ID N.A.
Organism Homo sapiens (Human)

Pathogen Information

Virus Name Human herpesvirus 4 (Epstein-Barr virus)
Virus Short Name EBV
Order Herpesvirales
Virus Family Herpesviridae
Virus Subfamily Gammaherpesvirinae
Genus Lymphocryptovirus
Species Human herpesvirus 4
Host Human, mammals
Cell Tropism B lymphocytes, oral epithelial cells, latency: remains latent in cd19+ b cells
Associated Disease Mononucleosis, associated with environemental diseases: burkitt?s lymphoma nasopharyngeal carcinoma (npc)
Mode of Transmission Contact, saliva
VIPR DB link http://www.viprbrc.org/brc/vipr_allSpecies_search.do?method=SubmitForm&decorator=herpes
ICTV DB link https://talk.ictvonline.org/ictv-reports/ictv_9th_report/dsdna-viruses-2011/w/dsdna_viruses/91/herpesviridae
Virus Host DB link http://www.genome.jp/virushostdb/view/?virus_lineage=Herpesviridae

Publication Information

Paper Title Interferon-gamma-inducible protein 16 (IFI16) is required for the maintenance of Epstein- Barr virus latency
Author's Name Gina Pisano, Arunava Roy, Mairaj Ahmed Ansari, Binod Kumar, Leela Chikoti and Bala Chandran
Journal Name Virology Journal
Pubmed ID 29132393
Abstract BACKGROUND: Epstein-Barr virus (EBV) exhibits both lytic and latent (Lat. I, II, and III) phases in an infected individual. Its during the latent phase of EBV that all EBV-associated cancers, including Burkitts lymphoma, nasopharyngeal carcinoma and lymphoproliferative disease arise. Interferon-gamma-inducible protein 16 (IFI16) is a well-established innate immune sensor and viral transcriptional regulator involved in response to invading DNA viruses. During latency, IFI16 remains in the nucleus, in part bound to the EBV genome however, neither its role in EBV lytic cycle or latency has been established. METHODS: Short interfering RNA against IFI16 and IFI16 overexpression were used to identify the role of IFI16 in the maintenance of EBV latency I. We also studied how induction of the lytic cycle affected IFI16 using the EBV positive, latently infected Akata or MUTU-1 cell lines. Akata cells were induced with TPA and MUTU-1 cells with TGF-beta up to 96 h and changes in IFI16 protein were analyzed by Western blotting and immunofluorescence microscopy. To assess the mechanism of IFI16 decrease, EBV DNA replication and late lytic transcripts were blocked using the viral DNA polymerase inhibitor phosphonoacetic acid. RESULTS: Knockdown of IFI16 mRNA by siRNA resulted in enhanced levels of EBV lytic gene expression from all temporal gene classes, as well as an increase in the total EBV genome abundance, whereas overexpression of exogenous IFI16 reversed these effects. Furthermore, 96 h after induction of the lytic cycle with either TPA (Akata) or TGF-beta (MUTU-1), IFI16 protein levels decreased up to 80% as compared to the EBV-negative cell line BJAB. Reduction in IFI16 was observed in cells expressing EBV lytic envelope glycoprotein. The decreased levels of IFI16 protein do not appear to be dependent on late lytic transcripts of EBV but suggest involvement of the immediate early, early, or a combination of both gene classes.CONCLUSIONS: Reduction of IFI16 protein levels following lytic cycle induction, as well as reactivation from latency after IFI16 mRNA knockdown suggests that IFI16 is crucial for the maintenance of EBV latency. More importantly, these results identify IFI16 as a unique host factor protein involved in the EBV lifecycle, making it a potential therapeutic target to combat EBV-related malignancies.
Used Model Akata and MUTU-1 cells
DOI 10.1186/s12985-017-0891-5