Virus Details


VHFID4977

Host Factor Information

Gene Name IFI16
HF Protein Name Gamma-interferon-inducible protein 16
HF Function Host Restriction factor
Uniprot ID Q16666
Protein Sequence View Fasta Sequence
NCBI Gene ID 3428
Host Factor (HF) Name in Paper IFI16
Gene synonyms IFNGIP1
Ensemble Gene ID ENSG00000163565
Ensemble Transcript ENST00000295809 [Q16666-1];ENST00000359709 [Q16666-6];ENST00000368131 [Q16666-2];ENST00000368132 [Q16666-2];ENST00000448393 [Q16666-3]
KEGG ID Go to KEGG Database
Gene Ontology ID(s) GO:0000122, GO:0000978, GO:0001047, GO:0001078, GO:0001819, GO:0002218, GO:0003690, GO:0003723, GO:0005634, GO:0005654, GO:0005730, GO:0005829, GO:0006351, GO:0006914, GO:0006954, GO:0008134, GO:0008283, GO:0010506, GO:0016020, GO:0016607, GO:0030097, GO:0030099, GO:0030224, GO:0032481, GO:0032731, GO:0040029, GO:0042149, GO:0042771, GO:0042802, GO:0043392, GO:0045071, GO:0045087, GO:0045824, GO:0045892, GO:0045944, GO:0051607, GO:0071479, GO:0072332, GO:0097202, GO:2000117,
MINT ID Q16666
STRING Click to see interaction map
GWAS Analysis Click to see gwas analysis
OMIM ID 147586
PANTHER ID N.A.
PDB ID(s) 2OQ0, 3B6Y, 3RLN, 3RLO, 3RNU, 4QGU,
pfam ID PF02760, PF02758,
Drug Bank ID N.A.,
ChEMBL ID N.A.
Organism Homo sapiens (Human)

Pathogen Information

Virus Name Human papillomavirus type 16
Virus Short Name HPV16
Order Unassigned
Virus Family Papillomaviridae
Virus Subfamily N.A.
Genus Alphapapillomavirus
Species Human papillomavirus 16
Host Human, monkeys
Cell Tropism Epithelial cells of skin, mucous membranes
Associated Disease Malignant tumours
Mode of Transmission Sexual, indirect and direct contact, auto-inoculation
VIPR DB link N.A.
ICTV DB link https://talk.ictvonline.org/ictv-reports/ictv_9th_report/dsdna-viruses-2011/w/dsdna_viruses/121/papillomaviridae
Virus Host DB link http://www.genome.jp/virushostdb/view/?virus_lineage=Papillomaviridae

Publication Information

Paper Title The Nuclear DNA Sensor IFI16 Acts as a Restriction Factor for Human Papillomavirus Replicationthrough Epigenetic Modifications of the Viral Promoters
Author's Name Irene Lo Cigno, Marco De Andrea, Cinzia Borgogna, Silvia Albertini, Manuela M. Landini, Alberto Peretti, Karen E. Johnson, Bala Chandran, Santo Landolfo, Marisa Gariglio
Journal Name Journal Of Virology
Pubmed ID 25972554
Abstract The human interferon-inducible IFI16 protein, an innate immune sensor of intracellular DNA, was recently demonstrated to act as a restriction factor for human cytomegalovirus (HCMV) and herpes simplex virus 1 (HSV-1) infection by inhibiting both viral-DNA replication and transcription. Through the use of two distinct cellular models, this study provides strong evidence in support of the notion that IFI16 can also restrict human papillomavirus 18 (HPV18) replication. In the first model, an immortalized keratinocyte cell line (NIKS) was used, in which the IFI16 protein was knocked down through the use of small interfering RNA (siRNA) technology and overexpressed following transduction with the adenovirus IFI16 (AdVIFI16) vector. The second model consisted of U2OS cells transfected by electroporation with HPV18 minicircles. In differentiated IFI16-silenced NIKS-HPV18 cells, viral-load values were significantly increased compared with differentiated control cells. Consistent with this, IFI16 overexpression severely impaired HPV18 replication in both NIKS and U2OS cells, thus confirming its antiviral restriction activity. In addition to the inhibition of viral replication, IFI16 was also able to reduce viral transcription, as demonstrated by viral-gene expression analysis in U2OS cells carrying episomal HPV18 minicircles and HeLa cells. We also provide evidence that IFI16 promotes the addition of heterochromatin marks and the reduction of euchromatin marks on viral chromatin at both early and late promoters, thus reducing both viral replication and transcription. Altogether, these results argue that IFI16 restricts chromatinized HPV DNA through epigenetic modifications and plays a broad surveillance role against viral DNA in the nucleus that is not restricted to herpesviruses.
Used Model NIKS cell
DOI 10.1128/JVI.00013-15