Virus Details


VHFID5090

Host Factor Information

Gene Name SMAD2
HF Protein Name Mothers against decapentaplegic homolog 2
HF Function Required for VSV infection
Uniprot ID Q15796
Protein Sequence View Fasta Sequence
NCBI Gene ID 4087
Host Factor (HF) Name in Paper SMAD2
Gene synonyms MADH2 MADR2
Ensemble Gene ID ENSG00000175387
Ensemble Transcript ENST00000262160 [Q15796-1];ENST00000356825 [Q15796-2];ENST00000402690 [Q15796-1];ENST00000586040 [Q15796-2]
KEGG ID Go to KEGG Database
Gene Ontology ID(s) GO:0000122, GO:0000790, GO:0000978, GO:0000981, GO:0001077, GO:0001657, GO:0001701, GO:0001706, GO:0001707, GO:0003682, GO:0003690, GO:0003700, GO:0005160, GO:0005634, GO:0005654, GO:0005667, GO:0005737, GO:0005829, GO:0007179, GO:0007182, GO:0007183, GO:0007352, GO:0007369, GO:0008134, GO:0008285, GO:0009749, GO:0009791, GO:0009952, GO:0010718, GO:0016579, GO:0017015, GO:0019902, GO:0023019, GO:0030073, GO:0030324, GO:0030512, GO:0030513, GO:0030618, GO:0031016, GO:0031053, GO:0031625, GO:0032444, GO:0032924, GO:0032991, GO:0033613, GO:0034713, GO:0035019, GO:0035265, GO:0035326, GO:0035556, GO:0038092, GO:0042060, GO:0042803, GO:0045165, GO:0045892, GO:0045893, GO:0045944, GO:0046332, GO:0046872, GO:0046982, GO:0048340, GO:0048617, GO:0048701, GO:0051098, GO:0060021, GO:0060039, GO:0060395, GO:0070410, GO:0070411, GO:0070412, GO:0070723, GO:0070878, GO:0071141, GO:0071144, GO:0097718, GO:1900224,
MINT ID Q15796
STRING Click to see interaction map
GWAS Analysis Click to see gwas analysis
OMIM ID 601366
PANTHER ID PTHR13703
PDB ID(s) 1DEV, 1KHX, 1U7V, 2LB3,
pfam ID PF03165, PF03166,
Drug Bank ID DB04522,
ChEMBL ID CHEMBL2396512
Organism Homo sapiens (Human)

Pathogen Information

Virus Name Vesicular stomatitis Indiana virus
Virus Short Name VSV
Order Mononegavirales
Virus Family Rhabdoviridae
Virus Subfamily N.A.
Genus Vesiculovirus
Species Indiana vesiculovirus
Host Human, cattle, horse, swine, sandflies, blackflies
Cell Tropism N.A.
Associated Disease Vesicular diseases, encephalitis
Mode of Transmission Mostely by sandflies
VIPR DB link https://www.viprbrc.org/brc/vipr_allSpecies_search.spg?method=SubmitForm&decorator=rhabdo
ICTV DB link https://talk.ictvonline.org/ictv-reports/ictv_9th_report/negative-sense-rna-viruses-2011/w/negrna_viruses/201/rhabdoviridae
Virus Host DB link N.A.

Publication Information

Paper Title RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses
Author's Name Debasis Panda, Anshuman Das, Phat X. Dinh, Sakthivel Subramaniam, Debasis Nayak, Nicholas J. Barrows, James L. Pearson, Jesse Thompson, David L. Kelly, Istvan Ladunga, and Asit K. Pattnaik
Journal Name PNAS
Pubmed ID 22065774
Abstract Negative-strand (NS) RNA viruses comprise many pathogens that cause serious diseases in humans and animals. Despite their clinical importance, little is known about the host factors required for their infection. Using vesicular stomatitis virus (VSV), a prototypic NS RNA virus in the family Rhabdoviridae, we conducted a human genome-wide siRNA screen and identified 72 host genes required for viral infection. Many of these identified genes were also required for infection by two other NS RNA viruses, the lymphocytic choriomeningitis virus of the Arenaviridae family and human parainfluenza virus type 3 of the Paramyxoviridae family. Genes affecting different stages of VSV infection, such as entry/uncoating, gene expression, and assembly/release, were identified. Depletion of the proteins of the coatomer complex I or its upstream effectors ARF1 or GBF1 led to detection of reduced levels of VSV RNA. Coatomer complex I was also required for infection of lymphocytic choriomeningitis virus and human parainfluenza virus type 3. These results highlight the evolutionarily conserved requirements for gene expression of diverse families of NS RNA viruses and demonstrate the involvement of host cell secretory pathway in the process.
Used Model HeLa cells
DOI 10.1073/pnas.1113643108