| Gene Name | NFIX |
| HF Protein Name | Nuclear factor 1 X-type |
| HF Function | Binding of NF-1X to JCV promoters is a critical mechanism supporting JCV propagation |
| Uniprot ID | Q14938 |
| Protein Sequence | View Fasta Sequence |
| NCBI Gene ID | 4784 |
| Host Factor (HF) Name in Paper | NF-1X |
| Gene synonyms | N.A. |
| Ensemble Gene ID | ENSG00000008441 |
| Ensemble Transcript | ENST00000397661 [Q14938-3];ENST00000585575 [Q14938-4];ENST00000587260 [Q14938-5];ENST00000587760 [Q14938-6];ENST00000592199 [Q14938-1] |
| KEGG ID | Go to KEGG Database |
| Gene Ontology ID(s) | GO:0000122, GO:0000981, GO:0003677, GO:0003700, GO:0003705, GO:0005634, GO:0006260, GO:0006366, GO:0045944, |
| MINT ID | Q14938 |
| STRING | Click to see interaction map |
| GWAS Analysis | Click to see gwas analysis |
| OMIM ID | 164005 |
| PANTHER ID | PTHR11492 |
| PDB ID(s) | N.A., |
| pfam ID | PF00859, PF03165, PF10524, |
| Drug Bank ID | N.A., |
| ChEMBL ID | N.A. |
| Organism | Homo sapiens (Human) |
| Virus Name | JC Virus |
| Virus Short Name | JC |
| Order | Unassigned |
| Virus Family | Polyomaviridae |
| Virus Subfamily | N.A. |
| Genus | Polyomavirus |
| Species | JC polyomavirus |
| Host | Mammals, human |
| Cell Tropism | Respiratory system, kidneys, or brain |
| Associated Disease | Progressive multifocal leukoencephalopathy |
| Mode of Transmission | N.A. |
| VIPR DB link | N.A. |
| ICTV DB link | https://talk.ictvonline.org/ictv-reports/ictv_9th_report/dsdna-viruses-2011/w/dsdna_viruses/129/polyomaviridae |
| Virus Host DB link | N.A. |
| Paper Title | Interactions between c-Jun, nuclear factor 1, and JC virus promoter sequences: implications for viral tropism |
| Author's Name | Veerasamy Ravichandran, Bruce F. Sabath, Peter N. Jensen, Sidney A. Houff, and Eugene O. Major |
| Journal Name | Journal Of Virology |
| Pubmed ID | 16928756 |
| Abstract | The infectious cycle of the human polyomavirus JC (JCV) is ultimately regulated in cellular nuclei at the level of viral protein expression and genomic replication. Such activity is prompted by interactions between variant nucleotide sequences within the JCV regulatory region (promoter) and cellular transcription factors that bind specific DNA consensus sites. In previous work we identified an NF-1 class member, NF-1X, as a critical transcription factor affecting the JCV cellular host range. Within variant JCV promoters, as well as other viral and cellular promoters, adjacently located NF-1 and AP-1 consensus sites are often found. The close proximity of these two binding sites suggests the opportunity for interaction between NF-1 and AP-1 proteins. Here, by electrophoretic mobility shift assays, we show temporal and dose-dependent interference by an AP-1 family member, c-Jun, upon NF-1 proteins binding an NF-1 consensus site derived from JCV promoter sequence. Moreover, as demonstrated by protein-protein interaction assays, we identify specific binding affinity independent of DNA binding between NF-1X and c-Jun. Finally, to compare the binding profiles of NF-1X and c-Jun on JCV promoter sequence in parallel with in vivo detection of viral activity levels, we developed an anchored transcriptional promoter (ATP) assay. With use of extracts from JCV-infected cells transfected to overexpress either NF-1X or c-Jun, ATP assays showed concurrent increases in NF-1X binding and viral protein expression. Conversely, increased c-Jun binding accompanied decreases in both NF-1X binding and viral protein expression. Therefore, inhibition of NF-1X binding by c-Jun appears to play a role in regulating levels of JCV activity. |
| Used Model | Human primary tonsillar stromal cells |
| DOI | 10.1128/JVI.01355-06 |
