Virus Details


VHFID6602

Host Factor Information

Gene Name FRS2
HF Protein Name Fibroblast growth factor receptor substrate 2
HF Function Required for LCMV infection
Uniprot ID Q8WU20
Protein Sequence View Fasta Sequence
NCBI Gene ID 10818
Host Factor (HF) Name in Paper FRS2
Gene synonyms N.A.
Ensemble Gene ID ENSG00000166225
Ensemble Transcript ENST00000397997;ENST00000549921;ENST00000550389
KEGG ID Go to KEGG Database
Gene Ontology ID(s) GO:0000165, GO:0000186, GO:0000187, GO:0001702, GO:0001759, GO:0003281, GO:0005068, GO:0005088, GO:0005104, GO:0005168, GO:0005768, GO:0005886, GO:0005887, GO:0005913, GO:0007185, GO:0007186, GO:0007405, GO:0007411, GO:0008543, GO:0008595, GO:0016020, GO:0016303, GO:0019211, GO:0030900, GO:0042981, GO:0046619, GO:0046934, GO:0050678, GO:0051897, GO:0060527, GO:0070307, GO:0070372, GO:2000726,
MINT ID Q8WU20
STRING Click to see interaction map
GWAS Analysis Click to see gwas analysis
OMIM ID 607743
PANTHER ID N.A.
PDB ID(s) 1XR0, 2MFQ,
pfam ID PF02174,
Drug Bank ID N.A.,
ChEMBL ID N.A.
Organism Homo sapiens (Human)

Pathogen Information

Virus Name Lymphocytic choriomeningitis virus
Virus Short Name LCMV
Order Unassigned
Virus Family Arenaviridae
Virus Subfamily N.A.
Genus Mammarenavirus
Species Lymphocytic choriomeningitis virus
Host Rodents and human
Cell Tropism Macrophages
Associated Disease Encephalitis
Mode of Transmission Zoonosis, fomite
VIPR DB link https://www.viprbrc.org/brc/vipr_allSpecies_search.spg?method=SubmitForm&decorator=arena
ICTV DB link https://talk.ictvonline.org/ictv-reports/ictv_9th_report/negative-sense-rna-viruses-2011/w/negrna_viruses/203/arenaviridae
Virus Host DB link N.A.

Publication Information

Paper Title RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses
Author's Name Debasis Panda, Anshuman Das, Phat X. Dinh, Sakthivel Subramaniam, Debasis Nayak, Nicholas J. Barrows, James L. Pearson, Jesse Thompson, David L. Kelly, Istvan Ladunga, and Asit K. Pattnaik
Journal Name PNAS
Pubmed ID 22065774
Abstract Negative-strand (NS) RNA viruses comprise many pathogens that cause serious diseases in humans and animals. Despite their clinical importance, little is known about the host factors required for their infection. Using vesicular stomatitis virus (VSV), a prototypic NS RNA virus in the family Rhabdoviridae, we conducted a human genome-wide siRNA screen and identified 72 host genes required for viral infection. Many of these identified genes were also required for infection by two other NS RNA viruses, the lymphocytic choriomeningitis virus of the Arenaviridae family and human parainfluenza virus type 3 of the Paramyxoviridae family. Genes affecting different stages of VSV infection, such as entry/uncoating, gene expression, and assembly/release, were identified. Depletion of the proteins of the coatomer complex I or its upstream effectors ARF1 or GBF1 led to detection of reduced levels of VSV RNA. Coatomer complex I was also required for infection of lymphocytic choriomeningitis virus and human parainfluenza virus type 3. These results highlight the evolutionarily conserved requirements for gene expression of diverse families of NS RNA viruses and demonstrate the involvement of host cell secretory pathway in the process.
Used Model HeLa cells
DOI 10.1073/pnas.1113643108