| Gene Name | RIMS4 |
| HF Protein Name | Regulating synaptic membrane exocytosis protein 4 |
| HF Function | Essential for virus infection |
| Uniprot ID | Q9H426 |
| Protein Sequence | View Fasta Sequence |
| NCBI Gene ID | 140730 |
| Host Factor (HF) Name in Paper | RIMS4 |
| Gene synonyms | C20orf190 |
| Ensemble Gene ID | ENSG00000101098 |
| Ensemble Transcript | ENST00000372851 [Q9H426-1];ENST00000541604 [Q9H426-2] |
| KEGG ID | Go to KEGG Database |
| Gene Ontology ID(s) | GO:0030054, GO:0042391, GO:0044325, GO:0048786, GO:0048791, GO:0097060, GO:2000300, |
| MINT ID | N.A. |
| STRING | Click to see interaction map |
| GWAS Analysis | Click to see gwas analysis |
| OMIM ID | 611601 |
| PANTHER ID | N.A. |
| PDB ID(s) | N.A., |
| pfam ID | PF00168, |
| Drug Bank ID | N.A., |
| ChEMBL ID | N.A. |
| Organism | Homo sapiens (Human) |
| Virus Name | West Nile virus |
| Virus Short Name | WNV |
| Order | Unassigned |
| Virus Family | Flaviviridae |
| Virus Subfamily | N.A. |
| Genus | Flavivirus |
| Species | West Nile virus |
| Host | Human, mammals, mosquitoes and ticks |
| Cell Tropism | Epithelial cells in the skin, kidney, intestine, and testes |
| Associated Disease | Fever, headache, vomiting, rash |
| Mode of Transmission | Arthropod bite, mainly mosquitoes |
| VIPR DB link | http://www.viprbrc.org/brc/home.spg?decorator=flavi |
| ICTV DB link | https://talk.ictvonline.org/ictv-reports/ictv_online_report/positive-sense-rna-viruses/w/flaviviridae |
| Virus Host DB link | http://www.genome.jp/virushostdb/view/?virus_lineage=Flaviviridae |
| Paper Title | RNA interference screen for human genes associated with West Nile virus infection |
| Author's Name | Manoj N Krishnan, Aylwin Ng, Bindu Sukumaran, Felicia D Gilfoy, Pradeep D Uchil, Hameeda Sultana, Abraham L Brass, Rachel Adametz, Melody Tsui, Feng Qian, Ruth R Montgomery, Sima Lev, Peter W Mason,Raymond A Koski, Stephen J Elledge, Ramnik J Xavier, Herve Agaisse and Erol Fikrig |
| Journal Name | NATURE |
| Pubmed ID | 18690214 |
| Abstract | West Nile virus (WNV), and related flaviviruses such as tick-borne encephalitis, Japanese encephalitis, yellow fever and dengue viruses, constitute a significant global human health problem. However, our understanding of the molecular interaction of such flaviviruses with mammalian host cells is limited. WNV encodes only 10 proteins, implying that it may use many cellular proteins for infection. WNV enters the cytoplasm through pH-dependent endocytosis, undergoes cycles of translation and replication, assembles progeny virions in association with endoplasmic reticulum, and exits along the secretory pathway. RNA interference (RNAi) presents a powerful forward genetics approach to dissect virus-host cell interactions. Here we report the identification of 305 host proteins that affect WNV infection, using a human-genome-wide RNAi screen. Functional clustering of the genes revealed a complex dependence of this virus on host cell physiology, requiring a wide variety of molecules and cellular pathways for successful infection. We further demonstrate a requirement for the ubiquitin ligase CBLL1 in WNV internalization, a post-entry role for the endoplasmic-reticulum-associated degradation pathway in viral infection, and the monocarboxylic acid transporter MCT4 as a viral replication resistance factor. By extending this study to dengue virus, we show that flaviviruses have both overlapping and unique interaction strategies with host cells. This study provides a comprehensive molecular portrait of WNV-human cell interactions that forms a model for understanding single plus-stranded RNA virus infection, and reveals potential antiviral targets. |
| Used Model | HeLa cells |
| DOI | 10.1038/nature07207 |
