Virus Details


VHFID9119

Host Factor Information

Gene Name PDCD6IP
HF Protein Name Programmed cell death 6-interacting protein
HF Function Helps in interaction between NS3 and Alix which contributes to YFV release
Uniprot ID Q8WUM4
Protein Sequence View Fasta Sequence
NCBI Gene ID 10015
Host Factor (HF) Name in Paper Alix
Gene synonyms AIP1 ALIX KIAA1375
Ensemble Gene ID ENSG00000170248
Ensemble Transcript ENST00000307296 [Q8WUM4-1];ENST00000457054 [Q8WUM4-2]
KEGG ID Go to KEGG Database
Gene Ontology ID(s) GO:0000281, GO:0000915, GO:0000920, GO:0001772, GO:0005815, GO:0005829, GO:0005923, GO:0005925, GO:0006915, GO:0010824, GO:0015031, GO:0016020, GO:0019058, GO:0031871, GO:0036258, GO:0039702, GO:0042470, GO:0042641, GO:0042803, GO:0043209, GO:0045199, GO:0046755, GO:0048306, GO:0051260, GO:0070062, GO:0070830, GO:0070971, GO:0090543, GO:0090559, GO:0090611, GO:1903543, GO:1903551, GO:1903553, GO:1903561,
MINT ID Q8WUM4
STRING Click to see interaction map
GWAS Analysis Click to see gwas analysis
OMIM ID 608074
PANTHER ID N.A.
PDB ID(s) 2OEV, 2OEW, 2OEX, 2OJQ, 2R02, 2R03, 2R05, 2XS1, 2XS8, 2ZNE, 3C3O, 3C3Q, 3C3R, 3E1R, 3WUV, 4JJY,
pfam ID PF13949, PF03097,
Drug Bank ID N.A.,
ChEMBL ID N.A.
Organism Homo sapiens (Human)

Pathogen Information

Virus Name Yellow fever virus
Virus Short Name YFV
Order Unassigned
Virus Family Flaviviridae
Virus Subfamily N.A.
Genus Flavivirus
Species Yellow fever virus
Host Human, mammals, mosquitoes and ticks
Cell Tropism N.A.
Associated Disease Hemorrhagic fever, encephalitis
Mode of Transmission Arthropod bite, mainly mosquitoes
VIPR DB link http://www.viprbrc.org/brc/home.spg?decorator=flavi
ICTV DB link https://talk.ictvonline.org/ictv-reports/ictv_online_report/positive-sense-rna-viruses/w/flaviviridae
Virus Host DB link http://www.genome.jp/virushostdb/view/?virus_lineage=Flaviviridae

Publication Information

Paper Title Interaction between the yellow fever virus nonstructural protein NS3 and the host protein Alix contributes to the release of infectious particles
Author's Name Lindsay N. Carpp, Ricardo Galler, Myrna C. Bonaldo
Journal Name Microbes and Infection
Pubmed ID 21044891
Abstract The ESCRT (endosomal sorting complex required for transport) machinery normally executes cargo sorting and internalization during multivesicular body biogenesis, but is also utilized by several enveloped viruses to facilitate their budding from cellular membranes. Although the mechanisms of flavivirus infectious particle assembly and release are poorly understood, the nonstructural protein NS3has been reported to have an essential role via an undescribed mechanism. Here, we shed light on the role of NS3 by connecting it to the host factor Alix, a protein intimately connected with the ESCRT machinery. We demonstrate that NS3 and Alix interact and show that dominant negative versions of Alix inhibit YFV release. Furthermore, we show that NS3 supplied in trans rescues this effect. We propose that the interaction between NS3 and Alix contributes to YFV release.
Used Model Vero cells
DOI 10.1016/j.micinf.2010.10.010